Manubot

CATALOG|

Here is a list of manuscripts that have been created with Manubot. Click on a thumbnail to view the interactive web version of the paper. Or use the other buttons to view the journal, preprint, pdf, and other versions. Note that some of these manuscripts are still works-in-progress.

Don't see your manuscript here? Is a manuscript missing a preprint or journal link? Suggest an addition or change to the catalog here.

(sorted by most recently updated)
Expanding polygenic risk scores to include automatic genotype encodings and gene-gene interactions
Le, Gong, Orzechowski, Manduchi, Moore
Aug 2019
Reusing label functions to extract multiple types of relationships from biomedical abstracts at scale
Nicholson, Himmelstein, Greene
Aug 2019
Opportunities and obstacles for deep learning in biology and medicine: 2019 update
Ching, Himmelstein, Beaulieu-Jones, Kalinin, Do, Way, Ferrero, Agapow, Zietz, Hoffman, Xie, Rosen, et al
Aug 2019
Introducing yt 3.0: Analysis and Visualization of Volumetric Data
Project, Turk, Goldbaum, ZuHone, Hummels, Ji, Lang, Yourself
Aug 2019
Ten Quick Tips for Deep Learning in Biology
Lee, Titus, Yu, Chevrette, Stewart, Cofer, Raschka, Maguire, Lengerich, Kalinin, Gitter, Greene, et al
Aug 2019
Binding thermodynamics of host-guest systems with SMIRNOFF99Frosst 1.0.5 from the Open Force Field Initiative
Slochower, Henriksen, Wang, Chodera, Mobley, Gilson
Jul 2019
GimmeMotifs: an analysis framework for transcription factor motif analysis
Bruse, Heeringen
Jul 2019
Edit me to practice contributing to a collaborative Manubot manuscript
Doe, Roe
Jul 2019
Open collaborative writing with Manubot
Himmelstein, Rubinetti, Slochower, Hu, Malladi, Greene, Gitter
Jul 2019
Global Emissions Timeseries
Gieseke, Gütschow, Nicholls
Jul 2019
Genotyping structural variants in pangenome graphs using the vg toolkit
Hickey, Heller, Monlong, Sibbesen, Siren, Eizenga, Dawson, Garrison, Novak, Paten
Jun 2019
Scaling tree-based automated machine learning to biomedical big data with a feature set selector
Le, Fu, Moore
Jun 2019
Des illusions visuelles aux hallucinations: une porte sur la perception
Perrinet
Jun 2019
Plasmids for independently tunable, low-noise expression of two genes
Silva, Lopes, Grilo, Hensel
May 2019
A set of Common Software Quality Assurance Baseline Criteria for Research Projects
Orviz, Lopez, Duma, David, Gomes, Donvito
Apr 2019
The people of the 24ᵗʰ annual Pacific Symposium on Biocomputing in Hawaii
Byrd, Fu, Greene, Himmelstein, Hu, Hunter, Jain, Kurkiewicz, Le, Li, Miller, Pinello, Ramola, Taroni, et al
Mar 2019
Bitcoin: A Peer-to-Peer Electronic Cash System
Nakamoto
Mar 2019
Sci-Hub provides access to nearly all scholarly literature
Himmelstein, Romero, Levernier, Munro, McLaughlin, Tzovaras, Greene
Mar 2019
Systematic integration of biomedical knowledge prioritizes drugs for repurposing
Himmelstein, Lizee, Hessler, Brueggeman, L. Chen, Hadley, Green, Khankhanian, E. Baranzini
Mar 2019
Network Methods for Multiomic Data Integration
Zietz
Dec 2018
Total Functional Score of Enhancer Elements Identifies Lineage-Specific Enhancers that Drive Differentiation of Pancreatic Cells
Malladi, Nagari, Franco, Kraus
Oct 2018
Progress Report: Genome-wide hypothesis generation for single-cell expression via latent spaces of deep neural networks
Hu, Greene
Aug 2018
Manubot 2018 development proposal
Himmelstein, Greene
Dec 2017
Vagelos Report Summer 2017